suggest_best_k-ConsensusPartitionList-method: Suggest the best number of subgroups
In cola: A Framework for Consensus Partitioning

Suggest the best number of subgroups

1 2	## S4 method for signature 'ConsensusPartitionList' suggest_best_k(object, jaccard_index_cutoff = 0.95)

`object`	A `ConsensusPartitionList-class` object.
`jaccard_index_cutoff`	The cutoff for Jaccard index for comparing to previous k.

It basically gives the best k for each combination of top-value method and partitioning method by calling suggest_best_k,ConsensusPartition-method.

1-PAC score higher than 0.95 is treated as very stable partition (marked by **) and higher than 0.9 is treated as stable partition (marked by *).

A data frame with the best k and other statistics for each combination of methods.

Zuguang Gu <z.gu@dkfz.de>

1 2	data(golub_cola) suggest_best_k(golub_cola)

cola documentation built on Nov. 8, 2020, 8:12 p.m.

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