R/00_S4_generic_methods.R

In cola: A Framework for Consensus Partitioning

setGeneric('plot_ecdf', function(object, ...) standardGeneric('plot_ecdf'))
setGeneric('dimension_reduction', function(object, ...) standardGeneric('dimension_reduction'))
setGeneric('test_to_known_factors', function(object, ...) standardGeneric('test_to_known_factors'))
setGeneric('select_partition_number', function(object, ...) standardGeneric('select_partition_number'))
setGeneric('compare_signatures', function(object, ...) standardGeneric('compare_signatures'))
setGeneric('cola_report', function(object, ...) standardGeneric('cola_report'))
setGeneric('top_rows_heatmap', function(object, ...) standardGeneric('top_rows_heatmap'))
setGeneric('suggest_best_k', function(object, ...) standardGeneric('suggest_best_k'))
setGeneric('collect_plots', function(object, ...) standardGeneric('collect_plots'))
setGeneric('get_membership', function(object, ...) standardGeneric('get_membership'))
setGeneric('get_param', function(object, ...) standardGeneric('get_param'))
setGeneric('get_classes', function(object, ...) standardGeneric('get_classes'))
setGeneric('collect_classes', function(object, ...) standardGeneric('collect_classes'))
setGeneric('all_nodes', function(object, ...) standardGeneric('all_nodes'))
setGeneric('consensus_heatmap', function(object, ...) standardGeneric('consensus_heatmap'))
setGeneric('get_stats', function(object, ...) standardGeneric('get_stats'))
setGeneric('collect_stats', function(object, ...) standardGeneric('collect_stats'))
setGeneric('membership_heatmap', function(object, ...) standardGeneric('membership_heatmap'))
setGeneric('get_anno_col', function(object, ...) standardGeneric('get_anno_col'))
setGeneric('all_leaves', function(object, ...) standardGeneric('all_leaves'))
setGeneric('functional_enrichment', function(object, ...) standardGeneric('functional_enrichment'))
setGeneric('get_matrix', function(object, ...) standardGeneric('get_matrix'))
setGeneric('get_signatures', function(object, ...) standardGeneric('get_signatures'))
setGeneric('is_stable_k', function(object, ...) standardGeneric('is_stable_k'))
setGeneric('top_rows_overlap', function(object, ...) standardGeneric('top_rows_overlap'))
setGeneric('predict_classes', function(object, ...) standardGeneric('predict_classes'))
setGeneric('is_best_k', function(object, ...) standardGeneric('is_best_k'))
setGeneric('max_depth', function(object, ...) standardGeneric('max_depth'))
setGeneric('get_anno', function(object, ...) standardGeneric('get_anno'))
setGeneric('get_consensus', function(object, ...) standardGeneric('get_consensus'))