API for compartmap
A/B compartment inference from ATAC-seq and methylation array data
| Global functions | |
|---|---|
| .arraycompartments | Source code |
| .createCorMatrix | Source code |
| .extractAB | Source code |
| .extractOpenClosed | Source code |
| .extractOpenClosedArray | Source code |
| .fsvd | Source code |
| .getFirstPCarray | Source code |
| .getGlobalMeansATAC | Source code |
| .getMeanGrSet | Source code |
| .getPaired | Source code |
| .getPairedAllChrs | Source code |
| .getPairedAllChrsArray | Source code |
| .getPairedArray | Source code |
| .getShrinkageTargets | Source code |
| .imputeMatrix | Source code |
| .meanSmoother | Source code |
| .meanSmootherArray | Source code |
| .removeBadBins | Source code |
| .returnBinnedMatrix | Source code |
| .run_examples | Source code |
| .squeezeit | Source code |
| .unitarize | Source code |
| array.data.chr14 | Man page |
| filtered.data.chr14 | Man page |
| fisherZ | Man page Source code |
| getABSignal | Man page Source code |
| getATACABsignal | Man page Source code |
| getArrayABsignal | Man page Source code |
| getBinMatrix | Man page Source code |
| getCompartments | Man page Source code |
| getCorMatrix | Man page Source code |
| ifisherZ | Man page Source code |
| plotAB | Man page Source code |
