Man pages for compartmap
A/B compartment inference from ATAC-seq and methylation array data
| array.data.chr14 | Example Illumina 450k methylation array data for compartmap |
| filtered.data.chr14 | Example ATAC-seq data for compartmap |
| fisherZ | Fisher's Z transformation |
| getABSignal | Calculate Pearson correlations of smoothed eigenvectors |
| getArrayABsignal | Estimate A/B compartments from methylation array data |
| getATACABsignal | Estimate A/B compartments from ATAC-seq data |
| getBinMatrix | Generate bins for A/B compartment estimation |
| getCompartments | Estimate A/B compartments |
| getCorMatrix | Calculate Pearson correlations of a binned matrix |
| ifisherZ | Fisher's Z transformation |
| plotAB | Plots A/B compartment estimates on a per chromosome basis |
