copa: Functions to perform cancer outlier profile analysis.

COPA is a method to find genes that undergo recurrent fusion in a given cancer type by finding pairs of genes that have mutually exclusive outlier profiles.

AuthorJames W. MacDonald
Date of publicationNone
MaintainerJames W. MacDonald <jmacdon@u.washington.edu>
LicenseArtistic-2.0
Version1.42.0

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Files in this package

copa/DESCRIPTION
copa/NAMESPACE
copa/R
copa/R/AllMethods.R copa/R/copa.R copa/R/zzz.R
copa/build
copa/build/vignette.rds
copa/inst
copa/inst/CITATION
copa/inst/doc
copa/inst/doc/copa.R
copa/inst/doc/copa.Rnw
copa/inst/doc/copa.pdf
copa/man
copa/man/copa.Rd copa/man/copa.package.Rd copa/man/copaFilter.Rd copa/man/copaPerm.Rd copa/man/copaTable.Rd copa/man/getans.Rd copa/man/pSum.Rd copa/man/perm.mat.Rd copa/man/plotCopa.Rd copa/man/scatterPlotCopa.Rd copa/man/summaryCopa.Rd
copa/src
copa/src/copa.c
copa/vignettes
copa/vignettes/copa.Rnw
copa/vignettes/copa.bib

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

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