copa: Functions to perform cancer outlier profile analysis.

COPA is a method to find genes that undergo recurrent fusion in a given cancer type by finding pairs of genes that have mutually exclusive outlier profiles.

Install the latest version of this package by entering the following in R:
source("https://bioconductor.org/biocLite.R")
biocLite("copa")
AuthorJames W. MacDonald
Bioconductor views DifferentialExpression OneChannel TwoChannel Visualization
Date of publicationNone
MaintainerJames W. MacDonald <jmacdon@u.washington.edu>
LicenseArtistic-2.0
Version1.42.0

View on Bioconductor

Files

DESCRIPTION
NAMESPACE
R
R/AllMethods.R R/copa.R R/zzz.R
build
build/vignette.rds
inst
inst/CITATION
inst/doc
inst/doc/copa.R
inst/doc/copa.Rnw
inst/doc/copa.pdf
man
man/copa.Rd man/copa.package.Rd man/copaFilter.Rd man/copaPerm.Rd man/copaTable.Rd man/getans.Rd man/pSum.Rd man/perm.mat.Rd man/plotCopa.Rd man/scatterPlotCopa.Rd man/summaryCopa.Rd
src
src/copa.c
vignettes
vignettes/copa.Rnw
vignettes/copa.bib

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