Functions to perform cancer outlier profile analysis.

copa | Calculate COPA Scores from a Set of Microarrays |

copaFilter | Pre-filter Genes for COPA Analysis |

copa.package | copa - A package to compute 'Cancer Outlier Profile Analysis' |

copaPerm | Measure Significance of COPA by Permutation |

copaTable | Summarize copa results |

getans | Interactive Function |

perm.mat | Produce a Matrix of Permuted Classlabels |

plotCopa | Plot Gene Pairs fom the Results of Running copa |

pSum | Compute all pairwise sums |

scatterPlotCopa | Create scatterplots of interesting gene pairs |

summaryCopa | Create Summary Showing Top Gene Pairs |

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