DensVM: Density-based local maxima cluster with SVM

Description Usage Arguments Value Author(s) Examples

View source: R/DensVM.R

Description

Density-based local maxima peak finding, subpopulation assigning with the power of SVM

Usage

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DensVM(ydata, xdata)

Arguments

ydata

a matrix of the dimension reduced(transformed) data

xdata

a matrix of the expression data

Value

a list contains a matrix peakdata of the peak numbers with different kernel bandwidth, and a matrix clusters of the cluster results

Author(s)

Chen Jinmiao

Examples

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d<-system.file('extdata',package='cytofkit')
fcsFile <- list.files(d,pattern='.fcs$',full=TRUE)
xdata <- cytof_exprsMerge(fcsFile, mergeMethod = 'fixed', fixedNum = 100)
ydata <- cytof_dimReduction(xdata)
#clusters <- DensVM(ydata, xdata)

cytofkit documentation built on Nov. 1, 2018, 3:50 a.m.