cytof_clusterMtrx: Expression values by cluster

Description Usage Arguments Value Examples

View source: R/cytof_postProcess.R

Description

Generate a matrix of expression values for cells in a cluster

Usage

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cytof_clusterMtrx(analysis_results, clusterMethod = NULL, cluster)

Arguments

analysis_results

analysis_results output of cytofkit to extract expression values from.

clusterMethod

The cluster method of interest. If none is selected, the first one will be used.

cluster

The cluster of interest.

Value

A data table with marker expression values of cells in a given cluster

Examples

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dir <- system.file('extdata',package='cytofkit')
file <- list.files(dir ,pattern='.RData$', full=TRUE)
load(file)
cluster2_table <- cytof_clusterMtrx(analysis_results, "Rphenograph", 2)

cytofkit documentation built on Nov. 1, 2018, 3:50 a.m.