QuantStudioFrame: Read QuantStudio file(s)

In ddCt: The ddCt Algorithm for the Analysis of Quantitative Real-Time PCR (qRT-PCR)

Description

Read QuantStudio file(s)

Usage

QuantStudioFrame(file)
readQuantStudio(file)

Arguments

file	Character vector of filenames

Details

This function reads the data given in the QuantStudio output files

Value

A object of class SDMFrame

Author(s)

Jitao David Zhang mailto:[e-mail]

Examples

sampdat <- QuantStudioFrame(system.file("extdata", c("QuantStudio_File1.txt", "QuantStudio_File2.txt"),package="ddCt"))

## use the getter methods
sampleNames(sampdat)

## or the overloaded primitive accessors
sampdat[1:3,"Sample"]

## see all unique samples
uniqueSampleNames(sampdat)

## replace all sample names 'Sample1' and 'Sample2' in sampdat
## with 'NewSample1' and 'NewSample2'
uniqueSampleNames(sampdat,c("Sample1","Sample2")) <- c("NewSample1","NewSample2")
uniqueSampleNames(sampdat)

## or use this syntax to replace the gene names
uniqueDetectorNames(sampdat) <- c(Hs00559368_m1="Gene1", Hs02576168_g1="Gene2")
uniqueDetectorNames(sampdat)

ddCt documentation built on Nov. 8, 2020, 4:57 p.m.