PBT_gmt: PBT gene sets related to kidney transplant

In dearseq: Differential Expression Analysis for RNA-seq data through a robust variance component test

Description

9 Pathogenesis Based Transcripts (PBT) gene sets specifically related to kidney transplant

Usage

data(PBT_gmt)

Format

a gmt object containing 9 gene sets specific to kidney transplant (see GSA.read.gmt), which is simply a list with the 3 following components:

• genesets: a list of n gene identifiers vectors composing eachgene set (each gene set is represented as the vector of the gene identifiers composing it)

• geneset.names: a vector of length n containing the gene set names (i.e. gene sets identifiers)

• geneset.descriptions: a vector of length n containing gene set descriptions (e.g. textual information on their biological function)

Source

http://atagc.med.ualberta.ca/Research/GeneLists

References

Halloran PF, De Freitas DG, Einecke G, et al., The molecular phenotype of kidney transplants: Personal viewpoint, Am J Transplant, 10: 2215-2222, 2010. .

Sellares J, Reeve J, Loupy A, et al., Molecular diagnosis of antibody-mediated rejection in human kidney transplants, Am J Transplant, 13:971-983, 2013.

Broin PO, Hayde N, Bao Y, et al., A pathogenesis-based transcript signature in donor-specific antibody-positive kidney transplant patients with normal biopsies, Genomics Data 2: 357-60, 2014.

Examples

data('PBT_gmt')
PBT_gmt

dearseq documentation built on Nov. 8, 2020, 5:49 p.m.