API for deco
Decomposing Heterogeneous Cohorts using Omic Data Profiling
| Global functions | |
|---|---|
| .LIMMAcalc | Source code |
| .analysisType | Source code |
| .cluster.stat | Source code |
| .combCalc | Source code |
| .combCalcM | Source code |
| .createTempFile | Source code |
| .customBoxplot | Source code |
| .formattingObj | Source code |
| .freqMatrix | Source code |
| .heatmap.3 | Source code |
| .heatplot.2 | Source code |
| .limmaSubsamp | Source code |
| .plotColorGuide | Source code |
| .plotDECObiplot | Source code |
| .plotDECOmanhattan | Source code |
| .plotDend | Source code |
| .plotEffectSize | Source code |
| .plotHeatmapDECO | Source code |
| .plotHeterogeneityDECO | Source code |
| .plotOD | Source code |
| .plotProfileDECO | Source code |
| .plotRankingF | Source code |
| .plotRankingH | Source code |
| .plotRepThr | Source code |
| .plotTau | Source code |
| .repThr | Source code |
| .statCalc | Source code |
| .timestamp | Source code |
| ALCLdata | Man page |
| AnnotateDECO | Man page Source code |
| NSCA | Source code |
| NSCACluster | Source code |
| NSCAcluster | Man page |
| NSCAcluster,deco-method | Man page |
| cophDECO | Source code |
| deco | Man page |
| deco-class | Man page |
| deco-package | Man page |
| decoNSCA | Man page Source code |
| decoRDA | Man page Source code |
| decoReport | Man page Source code |
| distFunc | Source code |
| featureTable | Man page |
| featureTable,deco-method | Man page |
| innerProductAssign | Source code |
| is.even | Source code |
| jColor | Source code |
| localMaxima | Source code |
| localMinima | Source code |
| overlapC | Source code |
| overlapFeature | Source code |
| plotAssociationH | Man page Source code |
| plotDECOProfile | Man page Source code |
| plotGainingH | Man page Source code |
| plotHeatmapH | Man page Source code |
| plotRepThr | Source code |
| quantSD | Source code |
| range01 | Source code |
| show,deco-method | Man page |
| stackpoly.2 | Source code |
| subsamplingProb | Source code |
| summary,deco-method | Man page |
