API for deepSNV
Detection of subclonal SNVs in deep sequencing data.

Global functions
BSM Source code
Extract Man page
HIVmix Man page
MASequence Source code
RCC Man page
RF Man page Source code
[,deepSNV,ANY,ANY,ANY-method Man page
bam2R Man page Source code
bbb Man page Source code
betabinLRT Man page Source code
bf2Vcf Man page Source code
consensusSequence Man page
consensusSequence,deepSNV-method Man page
consensusSequence,matrix-method Man page
control Man page
control,deepSNV-method Man page
coordinates Man page
coordinates,deepSNV-method Man page
counts Man page
dbetabinom Man page Source code
deepSNV Man page Source code
deepSNV,character,character-method Man page
deepSNV,character,matrix-method Man page
deepSNV,deepSNV,missing-method Man page
deepSNV,matrix,character-method Man page
deepSNV,matrix,matrix-method Man page
deepSNV-class Man page
deepSNV-package Man page
deepSNVsingle Source code
estimateDirichlet Man page
estimateDirichlet,deepSNV-method Man page
estimateDirichlet,matrix-method Man page
estimateDispersion Man page Source code
estimateDispersion,deepSNV,missing-method Man page
estimateDispersion,matrix,matrix-method Man page
estimateRho Man page Source code
loadAllData Man page Source code
logbb Source code
makePrior Man page Source code
manhattanPlot Man page Source code
mcChunk Man page Source code
mutID Source code
normalize Man page
normalize,deepSNV,missing-method Man page
normalize,matrix,matrix-method Man page
onLoad Source code
onUnload Source code
p.combine Man page Source code
p.val Man page
p.val,deepSNV-method Man page
pbetabinom Man page Source code
phiX Man page
pi Man page
plot.deepSNV Man page Source code
qvals2Vcf Man page Source code
regions2Coordinates Source code
repeatMask Man page
repeatMask,DNAString-method Man page
repeatMask,deepSNV-method Man page
select Source code
shearwater Man page
show,deepSNV-method Man page
significantSNV Source code
summary Man page
summary,deepSNV-method Man page
test Man page
test,deepSNV-method Man page
trueSNVs Man page
deepSNV documentation built on May 31, 2017, 11:17 a.m.