test-methods: Get test counts

Description Usage Arguments Value Examples

Description

Convenience function to obtain the test counts from a deepSNV object.

Usage

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test(deepSNV, ...)

## S4 method for signature 'deepSNV'
test(deepSNV, total = FALSE)

Arguments

deepSNV

a deepSNV-class object

...

Additional param passed to specific methods

total

Logical. If true the sum of both strands is returned

Value

A matrix with the absolute frequencies summed over both strands.

Examples

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data(HIVmix)
test(HIVmix)[1:10,]
test(HIVmix, total=TRUE)[1:10,]

deepSNV documentation built on Nov. 8, 2020, 8:01 p.m.