deepSNV
Detection of subclonal SNVs in deep sequencing data.

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RCC: Example RCC data

RCC: Example RCC data
In deepSNV: Detection of subclonal SNVs in deep sequencing data.

Description Examples

Description

Deep sequencing experiments of a renal cell carcinoma and healthy control tissue.

Examples

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data("RCC", package="deepSNV")
summary(RCC, adjust.method="bonferroni")[,1:6]
plot(RCC)
RCC.bb <- estimateDispersion(RCC, alternative="two.sided")
summary(RCC.bb, adjust.method="bonferroni")[,1:6]
plot(RCC.bb)

deepSNV documentation built on Nov. 8, 2020, 8:01 p.m.

Related to RCC in deepSNV...

deepSNV index
Package overview README.md An R package for detecting low frequency variants in deep sequencing experiments Subclonal variant calling with multiple samples and prior knowledge using shearwater Shearwater ML

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