Man pages for destiny
Creates diffusion maps
| coercions | Coercion methods |
| colorlegend | Color legend |
| cube_helix | Sequential color palette using the cube helix system |
| destiny | Create and plot diffusion maps |
| destiny-deprecated | Compatibility versions of functions for destiny 1.x scripts |
| destiny-generics | destiny generics |
| DiffusionMap-accessors | DiffusionMap accession methods |
| DiffusionMap-class | Create a diffusion map of cells |
| DiffusionMap-methods | DiffusionMap methods |
| dm_predict | Predict new data points using an existing DiffusionMap. The... |
| DPT | Diffusion Pseudo Time |
| DPT-matrix-methods | DPT Matrix methods |
| DPT-methods | DPT methods |
| eig_decomp | Fast eigen decomposition using 'eigs' |
| ExpressionSet-helpers | Convert object to ExpressionSet or read it from a file |
| extractions | Extraction methods |
| find_dm_k | Find a suitable k |
| find_sigmas | Calculate the average dimensionality for m different gaussian... |
| find_tips | Find tips in a DiffusionMap object |
| Gene-Relevance | Gene relevances for entire data set |
| Gene-Relevance-methods | Gene Relevance methods |
| Gene-Relevance-plotting | Plot gene relevance or differential map |
| guo | Guo at al. mouse embryonic stem cell qPCR data |
| knn | kNN search |
| l_which | Logical which |
| plot.DiffusionMap | 3D or 2D plot of diffusion map |
| plot.DPT | Plot DPT |
| plot.Sigmas | Plot Sigmas object |
| projection_dist | Projection distance |
| random_root | Find a random root cell index |
| Sigmas-class | Sigmas Object |
| updateObject-methods | Update old destiny objects to a newer version. |
