Files in destiny

Creates diffusion maps

NEWS

NAMESPACE

DESCRIPTION

LICENSE

src/utils.cpp

src/censoring.cpp

src/RcppExports.cpp

src/Makevars

src/exports.h

src/utils.h

data/guo.rda

data/guo_norm.rda

R/destiny-package.r R/diffusionmap-plotting.r R/sigmas.r R/plothelpers.r R/aaa.r R/sigmas-plotting.r R/dpt-methods.r R/colorlegend.r R/find_dm_k.r R/RcppExports.R R/dataset-helpers.r R/diffusionmap.r R/rankcor.r R/dpt-branching.r R/expressionset-helpers.r R/gene-relevance-plotting-rank.r R/s4-unions.r R/dpt-plotting.r R/compat.r R/accessor-generics.r R/guo-data.r R/gene-relevance.r R/eig_decomp.r R/utils.r R/censoring.r R/gene-relevance-plotting-gr-map.r R/cube_helix.r R/methods-extraction.r R/l_which.r R/gene-relevance-methods.r R/diffusionmap-methods.r R/dpt.r R/dpt-methods-matrix.r R/projection-dist.r R/methods-update.r R/dpt-helpers.r R/predict.r R/gene-relevance-plotting.r R/methods-coercion.r R/knn.r R/diffusionmap-methods-accession.r R/dist-matrix-coerce.r R/gene-relevance-plotting-differential-map.r

docs/index.html

docs/pkgdown.yml

docs/LICENSE-text.html

docs/docsearch.js

docs/404.html

docs/docsearch.css

docs/authors.html

docs/pkgdown.js

docs/link.svg

docs/pkgdown.css

docs/reference/updateObject-methods.html

docs/reference/plot.DPT.html

docs/reference/plot.Sigmas-1.png

docs/reference/cube_helix-1.png

docs/reference/DiffusionMap-class.html

docs/reference/plot.DiffusionMap.html

docs/reference/colorlegend-1.png

docs/reference/index.html

docs/reference/plot.DPT-3.png

docs/reference/l_which.html

docs/reference/guo.html

docs/reference/plot.DPT-4.png

docs/reference/Gene-Relevance-plotting-2.png

docs/reference/plot.DPT-2.png

docs/reference/DPT-matrix-methods-1.png

docs/reference/ExpressionSet-helpers.html

docs/reference/DPT-methods.html

docs/reference/find_dm_k-1.png

docs/reference/destiny-3.png

docs/reference/DPT.html

docs/reference/find_dm_k-2.png

docs/reference/destiny-deprecated.html

docs/reference/destiny-2.png

docs/reference/find_tips.html

docs/reference/geom_voronoi-1.png

docs/reference/Gene-Relevance-plotting-3.png

docs/reference/cube_helix.html

docs/reference/random_root.html

docs/reference/find_tips-1.png

docs/reference/Gene-Relevance-methods.html

docs/reference/coercions.html

docs/reference/eig_decomp.html

docs/reference/plot.Sigmas.html

docs/reference/geom_voronoi.html

docs/reference/updateObject-method.html

docs/reference/geom_voronoi-2.png

docs/reference/DPT-matrix-methods.html

docs/reference/Sigmas-class.html

docs/reference/plot.DPT-1.png

docs/reference/plot.DiffusionMap-1.png

docs/reference/find_dm_k.html

docs/reference/destiny-generics-1.png

docs/reference/DiffusionMap-accessors-1.png

docs/reference/Gene-Relevance-plotting.html

docs/reference/knn.html

docs/reference/find_sigmas-1.png

docs/reference/projection_dist.html

docs/reference/find_sigmas.html

docs/reference/Gene-Relevance.html

docs/reference/DiffusionMap-methods.html

docs/reference/Gene-Relevance-plotting-1.png

docs/reference/cube_helix-2.png

docs/reference/DiffusionMap-accessors.html

docs/reference/Gene-Relevance-plotting-4.png

docs/reference/colorlegend.html

docs/reference/destiny-1.png

docs/reference/destiny-generics.html

docs/reference/dm_predict-1.png

docs/reference/extractions.html

docs/reference/destiny.html

docs/reference/dm_predict.html

docs/reference/DPT-methods-1.png

demo/destiny.r

demo/00Index

vignettes/Gene-Relevance.ipynb

vignettes/.install_extras

vignettes/destiny_processors.py

vignettes/Gene-Relevance.ipynbmeta

vignettes/DPT.ipynbmeta

vignettes/bibliography.bib

vignettes/tidyverse.ipynb

vignettes/mmc4.xls

vignettes/tidyverse.ipynbmeta

vignettes/Global-Sigma.ipynbmeta

vignettes/Diffusion-Map-recap.ipynbmeta

vignettes/Diffusion-Maps.ipynb

vignettes/Diffusion-Maps.ipynbmeta

vignettes/mmc6.xls

vignettes/DPT.ipynb

vignettes/destiny.tplx

vignettes/Diffusion-Map-recap.ipynb

vignettes/destiny-base.tplx

vignettes/Global-Sigma.ipynb

vignettes/destiny-bib.tplx

man/projection_dist.Rd man/dm_predict.Rd man/plot.Sigmas.Rd man/knn.Rd man/ExpressionSet-helpers.Rd man/DPT-matrix-methods.Rd man/Gene-Relevance-methods.Rd man/Sigmas-class.Rd man/Gene-Relevance.Rd man/destiny.Rd man/DiffusionMap-class.Rd man/guo.Rd man/find_dm_k.Rd man/Gene-Relevance-plotting.Rd man/DPT-methods.Rd man/eig_decomp.Rd man/find_sigmas.Rd man/updateObject-methods.Rd man/colorlegend.Rd man/destiny-generics.Rd man/random_root.Rd man/destiny-deprecated.Rd man/plot.DPT.Rd man/DiffusionMap-accessors.Rd man/coercions.Rd man/plot.DiffusionMap.Rd man/DiffusionMap-methods.Rd man/extractions.Rd man/cube_helix.Rd man/DPT.Rd man/find_tips.Rd man/l_which.Rd tests/testthat.R tests/testthat/test_ggplot.r tests/testthat/test_utils.r tests/testthat/test_distances.r tests/testthat/test_dataset_types.r tests/testthat/test_knn.r tests/testthat/test_basic.r tests/testthat/test_pca.r tests/testthat/test_gr.r

inst/CITATION

inst/doc/Gene-Relevance.ipynb

inst/doc/Gene-Relevance.pdf

inst/doc/destiny_processors.py

inst/doc/Gene-Relevance.ipynbmeta

inst/doc/DPT.ipynbmeta

inst/doc/Global-Sigma.pdf

inst/doc/bibliography.bib

inst/doc/tidyverse.ipynb

inst/doc/Global-Sigma.r

inst/doc/tidyverse.ipynbmeta

inst/doc/Global-Sigma.ipynbmeta

inst/doc/Diffusion-Maps.pdf inst/doc/Diffusion-Map-recap.r

inst/doc/Diffusion-Map-recap.ipynbmeta

inst/doc/DPT.r inst/doc/DPT.pdf

inst/doc/Diffusion-Maps.ipynb

inst/doc/Diffusion-Maps.ipynbmeta

inst/doc/DPT.ipynb

inst/doc/destiny.tplx

inst/doc/Diffusion-Map-recap.ipynb

inst/doc/destiny-base.tplx

inst/doc/Global-Sigma.ipynb

inst/doc/Diffusion-Maps.r

inst/doc/destiny-bib.tplx

inst/doc/Diffusion-Map-recap.pdf inst/doc/tidyverse.r inst/doc/tidyverse.pdf inst/doc/Gene-Relevance.r

destiny documentation built on Nov. 8, 2020, 7:38 p.m.