inst/doc/Diffusion-Map-recap.r

options(repr.plot.width = 7, repr.plot.height = 6)
options(jupyter.plot_mimetypes = c('application/pdf', 'image/png'))

library(destiny)
data(guo)

dm_guo <- DiffusionMap(guo, verbose = FALSE,
                       censor_val = 15, censor_range = c(15, 40))
dm_guo

plot(dm_guo)

palette(cube_helix(6))
plot(dm_guo, col_by = 'num_cells',
     legend_main = 'Cell stage')

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destiny documentation built on Nov. 8, 2020, 7:38 p.m.