checks: Sanity checks for input

In diffuStats: Diffusion scores on biological networks

Description

.check_scores ensures that scores are suitable for diffusion

.available_methods is a character vector with the implemented scores

.check_method ensures that 'method' is a valid character

.check_metric ensures that 'metric' is a valid list of metric functions

.check_graph ensures that 'graph' is a valid igraph object

.check_K ensures that 'K' is a formally valid kernel. Does not check for spd

Usage

.check_scores(scores)

.available_methods

.check_method(method)

.check_metric(metric)

.check_graph(graph)

.check_K(K)

Arguments

scores	scores to check
method	object to test
metric	object to test
graph	object to test
K	object to test

Format

An object of class character of length 7.

Value

Functions return invisible() but throw warnings and errors as side effect

Examples

data(graph_toy)
diffuStats:::.check_scores(diffuStats:::to_list(graph_toy$input_mat))
diffuStats:::.check_method("raw")
diffuStats:::.check_metric(list(auc = metric_fun(curve = "ROC")))
data(graph_toy)
diffuStats:::.check_graph(graph_toy)
data(graph_toy)
diffuStats:::.check_K(regularisedLaplacianKernel(graph_toy))

diffuStats documentation built on Feb. 22, 2021, 10 a.m.