diggit-plot: Diggit plot

In diggit: Inference of Genetic Variants Driving Cellular Phenotypes

Description

This function generate plots for the diggit conditional analysis

Usage

## S4 method for signature 'diggit'
plot(x, mr = NULL, cluster = NULL, sub = NULL, ...)

Arguments

x	Diggit class object
mr	Optional vector of character strings indicating the MR names
cluster	Optional vector of cluster names
sub	Optional sub-title for the plot
...	Additional parameters to pass to the plot function

Value

Nothing, plots are generated in the default output device

Examples

data(gbm.expression, package="diggitdata")
data(gbm.cnv, package="diggitdata")
data(gbm.aracne, package="diggitdata")
dobj <- diggitClass(expset=gbmExprs, cnv=gbmCNV, regulon=gbmTFregulon)
dobj <- fCNV(dobj)
dobj <- aqtl(dobj, mr=c("CEBPD", "STAT3"), fcnv.adjust="fdr", verbose=FALSE)
dobj <- conditional(dobj, pheno="subtype", group1="MES", group2="PN", mr="STAT3", verbose=FALSE)
plot(dobj, cluster="3")

diggit documentation built on Nov. 8, 2020, 8:18 p.m.