Description Usage Arguments Details Value Author(s) See Also
View source: R/diffSpliceDGE.R
Plot relative log-fold changes by exons for the specified gene and highlight the significantly spliced exons.
1 | plotSpliceDGE(lrt, geneid=NULL, genecolname=NULL, rank=1L, FDR=0.05)
|
lrt |
|
geneid |
character string, ID of the gene to plot. |
genecolname |
column name of |
rank |
integer, if |
FDR |
numeric, mark exons with false discovery rate less than this cutoff. |
Plot relative log2-fold-changes by exon for the specified gene.
The relative logFC is the difference between the exon's logFC and the overall logFC for the gene, as computed by diffSpliceDGE
.
The significantly spliced individual exons are highlighted as red dots.
The size of the red dots are weighted by its significance.
A plot is created on the current graphics device.
Yunshun Chen, Yifang Hu and Gordon Smyth
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