API for enrichTF
Transcription Factors Enrichment Analysis
| Global functions | |
|---|---|
| .onLoad | Source code |
| EnrichStep-class | Man page |
| GenBackground | Man page |
| GeneOntology | Man page |
| GeneReguPipe | Man page Source code |
| MotifsInRegions | Man page |
| PECA_TF_enrich | Man page Source code |
| Pipelines | Man page |
| RegionConnectTargetGene | Man page |
| SingleSampleReport | Man page |
| TFsEnrichInRegions | Man page |
| TissueOpennessConserve | Man page |
| TissueOpennessSpecificity | Man page |
| UnzipAndMergeBed | Man page |
| checkAndInstall | Source code |
| checkAndInstallBSgenomeTestgenome | Source code |
| checkAndInstallHOMER | Source code |
| checkAndInstallOrgDbTestgenome | Source code |
| convertPWMFileToPWMobj | Source code |
| copyAndGunzip | Source code |
| dowloadConserveRegion | Source code |
| dowloadEnhancerREgeneFile | Source code |
| dowloadMotifFile | Source code |
| dowloadMotifTFTableFile | Source code |
| dowloadMotifWeightsFile | Source code |
| dowloadOpenRegion | Source code |
| dowloadREgeneFile | Source code |
| dowloadSampleName | Source code |
| dowloadTFgeneRelMtxFile | Source code |
| downloadAndGunzip | Source code |
| enrichFindMotifsInRegions | Man page |
| enrichFindMotifsInRegions,Step-method | Man page |
| enrichGenBackground | Man page |
| enrichGenBackground,Step-method | Man page |
| enrichGeneOntology | Man page |
| enrichGeneOntology,Step-method | Man page |
| enrichRegionConnectTargetGene | Man page |
| enrichRegionConnectTargetGene,Step-method | Man page |
| enrichSingleSampleReport | Man page |
| enrichSingleSampleReport,Step-method | Man page |
| enrichTFsEnrichInRegions | Man page |
| enrichTFsEnrichInRegions,Step-method | Man page |
| enrichTissueOpennessConserve | Man page |
| enrichTissueOpennessConserve,Step-method | Man page |
| enrichTissueOpennessSpecificity | Man page |
| enrichTissueOpennessSpecificity,Step-method | Man page |
| enrichUnzipAndMergeBed | Man page |
| enrichUnzipAndMergeBed,Step-method | Man page |
| findMotifsInRegions | Man page Source code |
| genBackground | Man page Source code |
| geneOntology | Man page Source code |
| getMotifInfo1 | Source code |
| get_os | Source code |
| homerOutputToBed | Source code |
| motifsInRegions | Man page |
| randomSampleOnGenome | Source code |
| regionConnectTargetGene | Man page Source code |
| tfsEnrichInRegions | Man page Source code |
| tissueOpennessConserve | Man page Source code |
| tissueOpennessSpecificity | Man page Source code |
| unzipAndMergeBed | Man page Source code |
