|EnrichStep-class||Base class of this package|
|GenBackground||Generate background regions and reset the size of foreground...|
|GeneOntology||Gene ontology enrichment analysis for provided gene list|
|MotifsInRegions||Find motifs in all input sequence regions|
|RegionConnectTargetGene||Connect regions with their target genes|
|SingleSampleReport||Final report for single group of regions|
|TFsEnrichInRegions||Test each TF is enriched in regions or not|
|TissueOpennessConserve||Tissue's open conservation of the given region|
|TissueOpennessSpecificity||Tissue's open specificity of the given region|
|UnzipAndMergeBed||Unzip all zipped BED files and merge them into one BED file|
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