API for enrichTF
Transcription Factors Enrichment Analysis

Global functions
.onLoad Source code
EnrichStep-class Man page
GenBackground Man page
GeneOntology Man page
GeneReguPipe Man page Source code
MotifsInRegions Man page
PECA_TF_enrich Man page Source code
Pipelines Man page
RegionConnectTargetGene Man page
SingleSampleReport Man page
TFsEnrichInRegions Man page
TissueOpennessConserve Man page
TissueOpennessSpecificity Man page
UnzipAndMergeBed Man page
checkAndInstall Source code
checkAndInstallBSgenomeTestgenome Source code
checkAndInstallHOMER Source code
checkAndInstallOrgDbTestgenome Source code
convertPWMFileToPWMobj Source code
copyAndGunzip Source code
dowloadConserveRegion Source code
dowloadEnhancerREgeneFile Source code
dowloadMotifFile Source code
dowloadMotifTFTableFile Source code
dowloadMotifWeightsFile Source code
dowloadOpenRegion Source code
dowloadREgeneFile Source code
dowloadSampleName Source code
dowloadTFgeneRelMtxFile Source code
downloadAndGunzip Source code
enrichFindMotifsInRegions Man page
enrichFindMotifsInRegions,Step-method Man page
enrichGenBackground Man page
enrichGenBackground,Step-method Man page
enrichGeneOntology Man page
enrichGeneOntology,Step-method Man page
enrichRegionConnectTargetGene Man page
enrichRegionConnectTargetGene,Step-method Man page
enrichSingleSampleReport Man page
enrichSingleSampleReport,Step-method Man page
enrichTFsEnrichInRegions Man page
enrichTFsEnrichInRegions,Step-method Man page
enrichTissueOpennessConserve Man page
enrichTissueOpennessConserve,Step-method Man page
enrichTissueOpennessSpecificity Man page
enrichTissueOpennessSpecificity,Step-method Man page
enrichUnzipAndMergeBed Man page
enrichUnzipAndMergeBed,Step-method Man page
findMotifsInRegions Man page Source code
genBackground Man page Source code
geneOntology Man page Source code
getMotifInfo1 Source code
get_os Source code
homerOutputToBed Source code
motifsInRegions Man page
randomSampleOnGenome Source code
regionConnectTargetGene Man page Source code
tfsEnrichInRegions Man page Source code
tissueOpennessConserve Man page Source code
tissueOpennessSpecificity Man page Source code
unzipAndMergeBed Man page Source code
enrichTF documentation built on Nov. 8, 2020, 6:15 p.m.