EnrichStep-class | Base class of this package |
GenBackground | Generate background regions and reset the size of foreground... |
GeneOntology | Gene ontology enrichment analysis for provided gene list |
MotifsInRegions | Find motifs in all input sequence regions |
Pipelines | ready-to-use pipelines |
RegionConnectTargetGene | Connect regions with their target genes |
SingleSampleReport | Final report for single group of regions |
TFsEnrichInRegions | Test each TF is enriched in regions or not |
TissueOpennessConserve | Tissue's open conservation of the given region |
TissueOpennessSpecificity | Tissue's open specificity of the given region |
UnzipAndMergeBed | Unzip all zipped BED files and merge them into one BED file |
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