Files in ensembldb

Utilities to create and use Ensembl-based annotation databases

NAMESPACE

DESCRIPTION

build/vignette.rds

R/Deprecated.R R/seqname-utils.R R/select-methods.R R/functions-utils.R R/proteinToX.R R/Classes.R R/transcriptToX.R R/Methods.R R/zzz.R R/functions-create-EnsDb.R R/Methods-Filter.R R/functions-Filter.R R/dbhelpers.R R/genomeToX.R R/functions-EnsDb.R R/Generics.R vignettes/MySQL-backend.Rmd vignettes/coordinate-mapping.Rmd vignettes/ensembldb.Rmd vignettes/coordinate-mapping-use-cases.Rmd

vignettes/references.bib

vignettes/ensembldb.bioschemas.html

vignettes/coordinate-mapping.bioschemas.html

vignettes/proteins.Rmd

vignettes/images/dblayout.png

man/proteinToGenome.Rd man/EnsDb.Rd man/EnsDb-AnnotationDbi.Rd man/genomeToTranscript.Rd man/Deprecated.Rd man/makeEnsemblDbPackage.Rd man/EnsDb-seqlevels.Rd man/global-filters.Rd man/EnsDb-exonsBy.Rd man/hasProteinData-EnsDb-method.Rd man/convertFilter.Rd man/Filter-classes.Rd man/transcriptToGenome.Rd man/transcriptToCds.Rd man/EnsDb-utils.Rd man/runEnsDbApp.Rd man/ProteinFunctionality.Rd man/cdsToTranscript.Rd man/EnsDb-lengths.Rd man/listEnsDbs.Rd man/transcriptToProtein.Rd man/genomeToProtein.Rd man/EnsDb-sequences.Rd man/proteinToTranscript.Rd man/useMySQL-EnsDb-method.Rd man/EnsDb-class.Rd tests/testthat.R tests/testthat/test_functions-utils.R tests/testthat/test_Classes.R tests/testthat/test_functions-create-EnsDb.R tests/testthat/test_functions-EnsDb.R tests/testthat/test_SymbolFilter.R tests/testthat/test_extractTranscriptSeqs.R tests/testthat/test_validity.R tests/testthat/test_seqLevelStyle.R tests/testthat/test_proteinToGenome.R tests/testthat/test_Methods-with-returnFilterColumns.R tests/testthat/test_transcriptToX.R tests/testthat/test_Methods.R tests/testthat/test_Methods-Filter.R tests/testthat/test_genomeToX.R tests/testthat/test_select-methods.R tests/testthat/test_Protein-related-tests.R tests/testthat/test_dbhelpers.R tests/testthat/test_functions-Filter.R

inst/YGRanges.RData

inst/NEWS

inst/CITATION

inst/doc/proteins.R inst/doc/MySQL-backend.Rmd inst/doc/coordinate-mapping.Rmd inst/doc/coordinate-mapping-use-cases.R inst/doc/ensembldb.R inst/doc/ensembldb.Rmd

inst/doc/MySQL-backend.html

inst/doc/coordinate-mapping-use-cases.Rmd inst/doc/coordinate-mapping.R

inst/doc/ensembldb.html

inst/doc/coordinate-mapping-use-cases.html

inst/doc/proteins.html

inst/doc/coordinate-mapping.html

inst/doc/proteins.Rmd inst/doc/MySQL-backend.R

inst/gtf/Devosia_geojensis.ASM96941v1.32.gtf.gz

inst/pkg-template/NAMESPACE

inst/pkg-template/DESCRIPTION

inst/pkg-template/R/zzz.R

inst/pkg-template/man/package.Rd

inst/perl/test_script.pl

inst/perl/get_gene_transcript_exon_tables.pl

inst/extended_tests/extended_tests.R inst/extended_tests/performance_tests.R inst/shinyHappyPeople/ui.R inst/shinyHappyPeople/server.R

inst/gff/Devosia_geojensis.ASM96941v1.32.gff3.gz

inst/scripts/checkEnsDbs.R inst/scripts/evaluate_gc_content.Rmd inst/scripts/generate-EnsDBs.R

inst/txt/ENST00000335953.fa.gz

inst/txt/ENST00000200135.fa.gz

inst/chrY/ens_metadata.txt

inst/chrY/ens_tx.txt

inst/chrY/ens_tx2exon.txt

inst/chrY/ens_exon.txt

inst/chrY/ens_gene.txt

inst/chrY/ens_chromosome.txt

ensembldb documentation built on Nov. 8, 2020, 4:57 p.m.