Determining Epigenetic Heterogeneity from Bisulfite Sequencing Data

compMatrix | Make Comparison Matrix |

data | example data background |

diffHet | Calculate Differential Heterogeneity |

epiBox | Make Boxplot from Comparison Matrix |

epiMA | Make MA Plot |

epiMap | Make Pheatmap from Comparison Matrix |

epiNetwork | Construct co-epihet network based on DEH loci. |

epiPathway | pathway annotation |

epiPCA | Make PCA Plot from Comparison Matrix |

epiTSNE | Make TSNE Plot from Comparison Matrix |

jaccard | Jaccard score calculation between modules from two subtypes. |

makeGR | Make List of GenomicRanges Object |

moduleAnno | module annotation |

moduleSim | module comparison between two subtypes |

moduleVisual | Modules visualization and network topology |

readGR | Make GenomicRanges Object |

shannon | Shannon Entropy |

splitn | The subtring extraction of a character vector |

summarize | Summarize Data |

userobj | GenomicRanges object generation |

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