getMethodsInputObjectEsetVis: wrapper to extract useful functions, depending if the object...

In esetVis: Visualizations of expressionSet Bioconductor object

Description

This returns an error is x is not of the correct class. The package SummarizedExperiment should be available if x is of class SummarizedExperiment.

Usage

getMethodsInputObjectEsetVis(x)

Arguments

x

object

Value

if the object is an ExpressionSet or a SummarizedExperiment, returns a list with the functions specific of the class of x, and equivalent of the ExpressionSet functions: 'sampleNames', 'featureNames', 'fData', 'pData', 'exprs'

• sampleNames: sample names

• featureNames: feature names

• fData: feature annotation

• pData: sample annotation

• exprs: data matrix

• varLabels: sample annotation variables

• fvarLabels: feature annotation variables

Author(s)

Laure Cougnaud

esetVis documentation built on Nov. 8, 2020, 4:51 p.m.