API for facopy
Feature-based association and gene-set enrichment for copy number alteration analysis in cancer
| Global functions | |
|---|---|
| addFeatures | Man page Source code |
| addVariables | Man page Source code |
| aggregateInt | Source code |
| allChrs | Source code |
| allCodes | Source code |
| alterCodes | Source code |
| alterationSummary | Man page Source code |
| alterations | Source code |
| calcCallFreqsInt | Source code |
| calcFreqsInt | Source code |
| calculateCor | Man page Source code |
| checkAlter | Source code |
| checkData | Source code |
| checkFeatures | Source code |
| checkFullModel | Source code |
| checkModels | Source code |
| checkSel | Source code |
| checkSelCols | Source code |
| checkVar | Source code |
| checkVarValue | Source code |
| checkYlim | Source code |
| corInt | Source code |
| enrichment | Source code |
| facopy | Man page Source code |
| facopy-package | Man page |
| facopyEnrichment | Man page Source code |
| facopyInfo | Man page |
| facopyInfo-class | Man page |
| facopyPlot | Man page Source code |
| facopyPlotInt | Source code |
| features | Source code |
| fill | Source code |
| genomes | Source code |
| getAlterCodes | Source code |
| getFacopyAnnot | Source code |
| getFacopyInfo | Man page Source code |
| getLOH | Source code |
| getTypeCode | Source code |
| graphPathway | Source code |
| makeArmsInt | Source code |
| makeCor | Source code |
| makeInfo | Source code |
| makeMatrixInt | Source code |
| makeVars | Source code |
| methods | Source code |
| myCalls | Man page |
| myStudy | Man page |
| myVariables | Man page |
| n | Source code |
| ord | Source code |
| pack | Source code |
| plotArm | Source code |
| plotBar | Man page Source code |
| plotBarBps | Source code |
| plotBarFeatures | Source code |
| plotBarInt | Source code |
| plotHist | Man page Source code |
| plotPCA | Man page Source code |
| plotVicinity | Source code |
| plotVicinityInt | Source code |
| plotZoom | Man page Source code |
| preview | Man page Source code |
| printList | Source code |
| readCNData | Man page Source code |
| readFromCNANORM | Source code |
| readFromEXOMECNV | Source code |
| readFromFASTCALL | Source code |
| readFromFREEC | Source code |
| readFromFolder | Source code |
| readFromGAP | Source code |
| readFromInt | Source code |
| readFromONCOSNP | Source code |
| readFromONCOSNPInt | Source code |
| readFromONCOSNPSEQ | Source code |
| readFromPATCHWORK | Source code |
| readFromSEQCNA | Source code |
| readFromTITAN | Source code |
| refcols | Source code |
| sCateg | Source code |
| summary,facopyInfo-method | Man page |
| summary.facopyInfo | Source code |
| types | Source code |
| unLOH | Source code |
| variableCor | Man page Source code |
| variableSummary | Man page Source code |
