alterationSummary: Alteration Summary

In facopy: Feature-based association and gene-set enrichment for copy number alteration analysis in cancer

Description

Summary of copy number calls in a facopyInfo object, by alteration type and chromosome arm.

Usage

alterationSummary(fad, filename = NULL)

Arguments

fad	facopyInfo object with a certain study's facopy data.
filename	Optional. A character specifying the name of the file to which to output the alteration summary table.

Details

A data.frame is always returned, and optionally written to a file.

Value

A data.frame with alteration frequencies by arm and alteration type.

Author(s)

David Mosen-Ansorena

Examples

data(myStudy) # load example study

alterationSummary(myStudy)

facopy documentation built on May 2, 2018, 2:30 a.m.