inst/RUnitScript_Files/runit.27TrHyperlog.R

In flowUtils: Utilities for flow cytometry

  fcsFile<-system.file("extdata/List-modeDataFiles","int-10_events_6_parameters.fcs",package="gatingMLData")
  gateFile <- system.file("extdata/Gating-MLFiles","27TrHyperlog.xml",package="gatingMLData")
  csvFile<-paste(system.file("extdata/ExpectedResults/27TrHyperlog",package="gatingMLData"))
    
  #source("~/R_HOME/proj/xmlTestSuite/RUnitScript_Files/flowUtils:::performGateTest.R")
 
  flowEnv=new.env()
  read.gatingML(gateFile,flowEnv)
  fcs <- read.FCS(fcsFile,transformation=FALSE)
   # expectedResults<-read.csv(csvFile,header=TRUE)


test.TrHL_G1<- function() {
	gateId<-"TrHL_G1"
	csvFile<-paste(csvFile,"/",gateId,".txt",sep="")
	expectedResult<-read.csv(csvFile,header=TRUE)
	flowUtils:::performGateTest(gateId,fcs,expectedResult,flowEnv)
}

test.TrHL_G2<- function() {
	gateId<-"TrHL_G2"
	csvFile<-paste(csvFile,"/",gateId,".txt",sep="")
	expectedResult<-read.csv(csvFile,header=TRUE)
	flowUtils:::performGateTest(gateId,fcs,expectedResult,flowEnv)
}

test.TrHL_G3<- function() {
	gateId<-"TrHL_G3"
	csvFile<-paste(csvFile,"/",gateId,".txt",sep="")
	expectedResult<-read.csv(csvFile,header=TRUE)
	flowUtils:::performGateTest(gateId,fcs,expectedResult,flowEnv)
}

test.TrHL_G4<- function() {
	gateId<-"TrHL_G4"
	csvFile<-paste(csvFile,"/",gateId,".txt",sep="")
	expectedResult<-read.csv(csvFile,header=TRUE)
	flowUtils:::performGateTest(gateId,fcs,expectedResult,flowEnv)
}

test.TrHL_G5<- function() {
	gateId<-"TrHL_G5"
	csvFile<-paste(csvFile,"/",gateId,".txt",sep="")
	expectedResult<-read.csv(csvFile,header=TRUE)
	flowUtils:::performGateTest(gateId,fcs,expectedResult,flowEnv)
}

test.TrHL_G6<- function() {
	gateId<-"TrHL_G6"
	csvFile<-paste(csvFile,"/",gateId,".txt",sep="")
	expectedResult<-read.csv(csvFile,header=TRUE)
	flowUtils:::performGateTest(gateId,fcs,expectedResult,flowEnv)
}

test.TrHL_G7<- function() {
	gateId<-"TrHL_G7"
	csvFile<-paste(csvFile,"/",gateId,".txt",sep="")
	expectedResult<-read.csv(csvFile,header=TRUE)
	flowUtils:::performGateTest(gateId,fcs,expectedResult,flowEnv)
}

test.TrHL_G8<- function() {
	gateId<-"TrHL_G8"
	csvFile<-paste(csvFile,"/",gateId,".txt",sep="")
	expectedResult<-read.csv(csvFile,header=TRUE)
	flowUtils:::performGateTest(gateId,fcs,expectedResult,flowEnv)
}