inst/RUnitScript_Files/runit.31TrCompensation.R

In flowUtils: Utilities for flow cytometry

  fcsFile<-system.file("extdata/List-modeDataFiles","int-10_events_8_parameters.fcs",package="gatingMLData")
  gateFile <- system.file("extdata/Gating-MLFiles","31TrCompensation.xml",package="gatingMLData")
  csvFile<-paste(system.file("extdata/ExpectedResults/31TrCompensation",package="gatingMLData"))
 
  flowEnv=new.env()
  read.gatingML(gateFile,flowEnv)
  fcs <- read.FCS(fcsFile,transformation=FALSE)
 
test.compG1<- function() {
	gateId<-"compG1"
	csvFile<-paste(csvFile,"/",gateId,".txt",sep="")
	expectedResult<-read.csv(csvFile,header=TRUE)
	flowUtils:::performGateTest(gateId,fcs,expectedResult,flowEnv)
}

test.compG2<- function() {
	gateId<-"compG2"
	csvFile<-paste(csvFile,"/",gateId,".txt",sep="")
	expectedResult<-read.csv(csvFile,header=TRUE)
	flowUtils:::performGateTest(gateId,fcs,expectedResult,flowEnv)
}

test.compG3<- function() {
	gateId<-"compG3"
	csvFile<-paste(csvFile,"/",gateId,".txt",sep="")
	expectedResult<-read.csv(csvFile,header=TRUE)
	flowUtils:::performGateTest(gateId,fcs,expectedResult,flowEnv)
}

test.compG4<- function() {
	gateId<-"compG4"
	csvFile<-paste(csvFile,"/",gateId,".txt",sep="")
	expectedResult<-read.csv(csvFile,header=TRUE)
	flowUtils:::performGateTest(gateId,fcs,expectedResult,flowEnv)
}

test.compG5<- function() {
	gateId<-"compG5"
	csvFile<-paste(csvFile,"/",gateId,".txt",sep="")
	expectedResult<-read.csv(csvFile,header=TRUE)
	flowUtils:::performGateTest(gateId,fcs,expectedResult,flowEnv)
}

test.compG6<- function() {
	gateId<-"compG6"
	csvFile<-paste(csvFile,"/",gateId,".txt",sep="")
	expectedResult<-read.csv(csvFile,header=TRUE)
	flowUtils:::performGateTest(gateId,fcs,expectedResult,flowEnv)
}