normalizeFrames: Normalize the values of a 'Frames' object
In flowcatchR: Tools to analyze in vivo microscopy imaging data focused on tracking flowing blood cells
Description
Usage
Arguments
Value
Author(s)
Examples
Description
Applies a transformation to the Frames object in a way that the intensities
throughout the acquisition are normalized overall in term of pixel values sums.
It can be used to compensate for example a global change in the illumination values,
e.g. due to changed acquisition conditions in experiments that span long timescales.
Usage
1
normalizeFrames(frames, normFun = "median")
Arguments
frames
A Frames object to normalize
normFun
The normalization function chosen. Can be one of mean or median
Value
A Frames object with normalized pixel values.
Author(s)
Federico Marini, marinif@uni-mainz.de, 2014
Examples
1
2
data(MesenteriumSubset)
normalizeFrames(MesenteriumSubset,normFun="median")
flowcatchR documentation built on Nov. 8, 2020, 5:04 p.m.
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Description Usage Arguments Value Author(s) Examples
Description
Applies a transformation to the Frames object in a way that the intensities
throughout the acquisition are normalized overall in term of pixel values sums.
It can be used to compensate for example a global change in the illumination values,
e.g. due to changed acquisition conditions in experiments that span long timescales.
Usage
1 | normalizeFrames(frames, normFun = "median")
|
Arguments
frames |
A |
normFun |
The normalization function chosen. Can be one of |
Value
A Frames object with normalized pixel values.
Author(s)
Federico Marini, marinif@uni-mainz.de, 2014
Examples
1 2 | data(MesenteriumSubset)
normalizeFrames(MesenteriumSubset,normFun="median")
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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