gaga: GaGa hierarchical model for high-throughput data analysis

Implements the GaGa model for high-throughput data analysis, including differential expression analysis, supervised gene clustering and classification. Additionally, it performs sequential sample size calculations using the GaGa and LNNGV models (the latter from EBarrays package).

AuthorDavid Rossell <rosselldavid@gmail.com>.
Date of publicationNone
MaintainerDavid Rossell <rosselldavid@gmail.com>
LicenseGPL (>= 2)
Version2.20.0

View on Bioconductor

Files in this package

gaga/ChangeLog
gaga/DESCRIPTION
gaga/NAMESPACE
gaga/R
gaga/R/buildPatterns.r
gaga/R/checkfit.gagafit.r
gaga/R/checkfit.r
gaga/R/classpred.gagafit.r
gaga/R/classpred.r
gaga/R/dcgamma.r
gaga/R/findgenes.gagafit.r
gaga/R/findgenes.matrix.r
gaga/R/findgenes.nnfit.r
gaga/R/findgenes.r
gaga/R/fitGG.r
gaga/R/fitNN.r
gaga/R/forwsimDiffExpr.r
gaga/R/geneclus.gagafit.r
gaga/R/geneclus.r
gaga/R/getpar.gagafit.r
gaga/R/getpar.r
gaga/R/groups2int.r
gaga/R/mcgamma.r
gaga/R/parest.gagafit.r
gaga/R/parest.r
gaga/R/plotForwSim.r
gaga/R/posmeansGG.gagafit.r
gaga/R/posmeansGG.r
gaga/R/powclasspred.gagafit.r
gaga/R/powclasspred.r
gaga/R/powfindgenes.r
gaga/R/powsimprior.r
gaga/R/ppGG.r
gaga/R/print.gagaclus.r
gaga/R/print.gagafit.r
gaga/R/print.gagahyp.r
gaga/R/print.nnfit.r
gaga/R/rcgamma.r
gaga/R/seqBoundariesGrid.r
gaga/R/simGG.r
gaga/R/simNN.r
gaga/R/simnewsamples.r
gaga/build
gaga/build/vignette.rds
gaga/inst
gaga/inst/CITATION
gaga/inst/doc
gaga/inst/doc/gagamanual.R
gaga/inst/doc/gagamanual.Rnw
gaga/inst/doc/gagamanual.pdf
gaga/man
gaga/man/buildPatterns.Rd gaga/man/checkfit.Rd gaga/man/classpred.Rd gaga/man/dcgamma.Rd gaga/man/findgenes.Rd gaga/man/fitGG.Rd gaga/man/forwsimDiffExpr.Rd gaga/man/geneclus.Rd gaga/man/getpar.Rd gaga/man/parest.Rd gaga/man/plotForwSim.Rd gaga/man/posmeansGG.Rd gaga/man/powclasspred.Rd gaga/man/powfindgenes.Rd gaga/man/print.gagaclus.Rd gaga/man/print.gagafit.Rd gaga/man/print.gagahyp.Rd gaga/man/seqBoundariesGrid.Rd gaga/man/simGG.Rd gaga/man/simnewsamples.Rd
gaga/src
gaga/src/cseqdesma.c
gaga/src/cseqdesma.h
gaga/src/cstat.c
gaga/src/cstat.h
gaga/vignettes
gaga/vignettes/gagamanual.Rnw
gaga/vignettes/references.bib

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

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