GaGa hierarchical model for high-throughput data analysis

buildPatterns | Build a matrix with all possible patterns given a number of... |

checkfit | Check goodness-of-fit of GaGa and MiGaGa models |

classpred | Predict the class that a new sample belongs to. |

dcgamma | Approximate gamma shape distribution |

findgenes | Find differentially expressed genes after GaGa or... |

fitGG | Fit GaGa hierarchical model |

forwsimDiffExpr | Forward simulation for differential expression. |

geneclus | Cluster genes into expression patterns. |

getpar | Extract hyper-parameter estimates from a gagafit or nnfit... |

parest | Parameter estimates and posterior probabilities of... |

plotForwSim | Plot forward simulation trajectories |

posmeansGG | Gene-specific posterior means |

powclasspred | Expected probability that a future sample is correctly... |

powfindgenes | Power computations for differential expression |

print.gagaclus | Print an object of class gagaclus |

print.gagafit | Print an object of class gagafit or nnfit |

print.gagahyp | Print an object of class gagahyp |

seqBoundariesGrid | Evaluate expected utility for parametric sequential stopping... |

simGG | Prior predictive simulation |

simnewsamples | Posterior predictive simulation |

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