Man pages for gaga
GaGa hierarchical model for high-throughput data analysis
| buildPatterns | Build a matrix with all possible patterns given a number of... |
| checkfit | Check goodness-of-fit of GaGa and MiGaGa models |
| classpred | Predict the class that a new sample belongs to. |
| dcgamma | Approximate gamma shape distribution |
| findgenes | Find differentially expressed genes after GaGa or... |
| fitGG | Fit GaGa hierarchical model |
| forwsimDiffExpr | Forward simulation for differential expression. |
| geneclus | Cluster genes into expression patterns. |
| getpar | Extract hyper-parameter estimates from a gagafit or nnfit... |
| parest | Parameter estimates and posterior probabilities of... |
| plotForwSim | Plot forward simulation trajectories |
| posmeansGG | Gene-specific posterior means |
| powclasspred | Expected probability that a future sample is correctly... |
| powfindgenes | Power computations for differential expression |
| print.gagaclus | Print an object of class gagaclus |
| print.gagafit | Print an object of class gagafit or nnfit |
| print.gagahyp | Print an object of class gagahyp |
| seqBoundariesGrid | Evaluate expected utility for parametric sequential stopping... |
| simGG | Prior predictive simulation |
| simnewsamples | Posterior predictive simulation |
