gaggle: Broadcast data between R and Gaggle

This package contains functions enabling data exchange between R and Gaggle enabled bioinformatics software, including Cytoscape, Firegoose and Gaggle Genome Browser.

Install the latest version of this package by entering the following in R:
source("https://bioconductor.org/biocLite.R")
biocLite("gaggle")
AuthorPaul Shannon <pshannon@systemsbiology.org>
Bioconductor views Annotation DataImport GraphAndNetwork ThirdPartyClient Visualization
Date of publicationNone
MaintainerChristopher Bare <cbare@systemsbiology.org>
LicenseGPL version 2 or newer
Version1.42.0
http://gaggle.systemsbiology.net/docs/geese/r/

View on Bioconductor

Functions

addSingle Man page
broadcast Man page
connectToGaggle Man page
disconnectFromGaggle Man page
gaggleInit Man page
geese Man page
getCluster Man page
getJavaClassName Man page
getMatrix Man page
getNameList Man page
getNetwork Man page
getSpecies Man page
getTargetGoose Man page
getTuple Man page
getTupleAsList Man page
hideGoose Man page
newSingle Man page
newTuple Man page
setSpecies Man page
setTargetGoose Man page
showGoose Man page
testGagglePackage Man page
tupleToList Man page

Files

DESCRIPTION
NAMESPACE
R
R/gaggle.R
build
build/vignette.rds
inst
inst/doc
inst/doc/gaggle.R
inst/doc/gaggle.Rnw
inst/doc/gaggle.pdf
inst/jars
inst/jars/gaggleRShell.jar
inst/unitTests
inst/unitTests/gaggleTest.R
man
man/broadcast.Rd man/connectToGaggle.Rd man/disconnectFromGaggle.Rd man/gaggleInit.Rd man/geese.Rd man/getCluster.Rd man/getJavaClassName.Rd man/getMatrix.Rd man/getNameList.Rd man/getNetwork.Rd man/getSpecies.Rd man/getTargetGoose.Rd man/getTuple.Rd man/hideGoose.Rd man/newTuple.Rd man/setSpecies.Rd man/setTargetGoose.Rd man/showGoose.Rd man/testGagglePackage.Rd
vignettes
vignettes/SHBN.png
vignettes/cyRandomEGraph8.png
vignettes/gaggle.Rnw
vignettes/gaggleData.png
vignettes/gaggleTarget.png
vignettes/gooseSelectionMenu.png
vignettes/listening.png

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

Please suggest features or report bugs with the GitHub issue tracker.

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