gaggle: Broadcast data between R and Gaggle

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This package contains functions enabling data exchange between R and Gaggle enabled bioinformatics software, including Cytoscape, Firegoose and Gaggle Genome Browser.

Author
Paul Shannon <pshannon@systemsbiology.org>
Date of publication
None
Maintainer
Christopher Bare <cbare@systemsbiology.org>
License
GPL version 2 or newer
Version
1.42.0
URLs

View on Bioconductor

Man pages

broadcast
Broadcast Data to the Gaggle
connectToGaggle
Connect to the Gaggle Boss
disconnectFromGaggle
Disconnect from the Gaggle Boss
gaggleInit
Initialize the R Goose, registering with the Gaggle
geese
What Geese (Programs) are Currently Running in the Gaggle?
getCluster
Create an R variable from Most Recently Broadcast Cluster
getJavaClassName
Get Java class name
getMatrix
Create an R matrix variable from Most Recently Broadcast...
getNameList
Create an R variable from Most Recently Broadcast NameList
getNetwork
Create an R network variable from a Broadcast Network
getSpecies
Specify the Species To Which Subsequent Data Belongs
getTargetGoose
Which Goose will Receive Broadcasts?
getTuple
Create an R variable from Most Recently Broadcast Tuple
hideGoose
Hide a Goose from View
newTuple
Manipulate the Gaggle Tuple data type
setSpecies
Specify the Species To Which Subsequent Data Belongs
setTargetGoose
Specify Which Goose will Receive Broadcasts
showGoose
Show a Goose On the Screen
testGagglePackage
Run unit tests for the Gaggle Package

Files in this package

gaggle/DESCRIPTION
gaggle/NAMESPACE
gaggle/R
gaggle/R/gaggle.R
gaggle/build
gaggle/build/vignette.rds
gaggle/inst
gaggle/inst/doc
gaggle/inst/doc/gaggle.R
gaggle/inst/doc/gaggle.Rnw
gaggle/inst/doc/gaggle.pdf
gaggle/inst/jars
gaggle/inst/jars/gaggleRShell.jar
gaggle/inst/unitTests
gaggle/inst/unitTests/gaggleTest.R
gaggle/man
gaggle/man/broadcast.Rd
gaggle/man/connectToGaggle.Rd
gaggle/man/disconnectFromGaggle.Rd
gaggle/man/gaggleInit.Rd
gaggle/man/geese.Rd
gaggle/man/getCluster.Rd
gaggle/man/getJavaClassName.Rd
gaggle/man/getMatrix.Rd
gaggle/man/getNameList.Rd
gaggle/man/getNetwork.Rd
gaggle/man/getSpecies.Rd
gaggle/man/getTargetGoose.Rd
gaggle/man/getTuple.Rd
gaggle/man/hideGoose.Rd
gaggle/man/newTuple.Rd
gaggle/man/setSpecies.Rd
gaggle/man/setTargetGoose.Rd
gaggle/man/showGoose.Rd
gaggle/man/testGagglePackage.Rd
gaggle/vignettes
gaggle/vignettes/SHBN.png
gaggle/vignettes/cyRandomEGraph8.png
gaggle/vignettes/gaggle.Rnw
gaggle/vignettes/gaggleData.png
gaggle/vignettes/gaggleTarget.png
gaggle/vignettes/gooseSelectionMenu.png
gaggle/vignettes/listening.png