ScoreMatrix-class: An S4 class for storing 'ScoreMatrix' function results

In genomation: Summary, annotation and visualization of genomic data

Description

The resulting object is an extension of a matrix object, and stores values (typically genome-wide scores) for a predefined set of regions Each row on the ScoreMatrix is a predefined region (Ex: CpG islands, promoters) and columns are values across those regions.

Constructors

see ScoreMatrix

Coercion

as(from, "matrix"): Creates a matrix from ScoreMatrix object. You can also use S3Part() function to extract the matrix from ScoreMatrix object.

Subsetting

In the code snippets below, x is a ScoreMatrix object. 'x[i,j]': Get or set elements from row i and column j and return a subset ScoreMatrix object.

See Also

ScoreMatrix

genomation documentation built on Nov. 8, 2020, 5:21 p.m.