orderBy-methods: Reorder all elements of a ScoreMatrixList to a given ordering...

In genomation: Summary, annotation and visualization of genomic data

Description

Reorder all elements of a ScoreMatrixList to a given ordering vector

Usage

orderBy(sml, ord.vec)

## S4 method for signature 'ScoreMatrixList'
orderBy(sml, ord.vec)

Arguments

sml	ScoreMatrixList object
ord.vec	an integer vector

Value

ScoreMatrixList object

Examples

library(GenomicRanges)
data(cage)
data(cpgi)
data(promoters)

cage$tpm = NULL
targets = GRangesList(cage=cage, cpgi=cpgi)
sml = ScoreMatrixList(targets, promoters, bin.num=10)
kmeans.clust = kmeans(sml$cage,3)
 
sml.ordered = orderBy(sml, kmeans.clust$cluster)

multiHeatMatrix(sml.ordered)

genomation documentation built on Nov. 8, 2020, 5:21 p.m.