Man pages for gespeR
Gene-Specific Phenotype EstimatoR
| annotate.gsp-methods | annotate.gsp |
| as.data.frame.concordance | Coerce method |
| as.data.frame-Phenotypes-method | Convert Phenotypes object to a data.frame |
| concordance | Evaluate the concordance between Phenotype objects |
| c-Phenotypes-method | Concatenate Phenotypes objects |
| dim-Phenotypes-method | Dimension of a 'Phenotypes' object |
| gespeR-class | gespeR |
| gespeR-package | Package: Gene-Specific Phenotype EstimatoR |
| gspssp-methods | Retrieve GSPs and SSPs from 'gespeR' objects |
| join-methods | join |
| lasso.rand | Randomized Lasso |
| na.rem-methods | Remove NA/Inf values from phenotype vectors |
| path-methods | path |
| Phenotypes-class | Phenotypes |
| plot.concordance | Plot concordance |
| plot.gespeR | Plot method for 'gespeR' objects |
| plot.Phenotypes | Plot method for Phenotype objects |
| rbo | Rank biased overlap (Webber et al., 2010) |
| scores-methods | scores |
| simData | Example data: Simulated phenotypes and target relations for 4... |
| stabilityfits | Example fits for phenotypes from simulated screening data A,... |
| stability-methods | stability |
| stability.selection | Stability Selection |
| sub-Phenotypes-ANY-ANY-ANY-method | Subsetting for Phenotype objects. |
| sub-TargetRelations-ANY-ANY-ANY-method | Subsetting for TargetRelations objects. |
| TargetRelations-class | TargetRelations |
| target-relations-methods | target.relations |
| trmatrix-methods | Methods for values of 'TargetRelations' objects |
| values-methods | values |
