TargetRelations-class: TargetRelations

In gespeR: Gene-Specific Phenotype EstimatoR

Description

Class used to represent siRNA-to-gene on- and off-target relations for a knockdown library and a set of genes.

Usage

TargetRelations(targets)

## S4 method for signature 'character'
TargetRelations(targets)

## S4 method for signature 'Matrix'
TargetRelations(targets)

Arguments

targets

Path to a .rds target relations matrix file or Matrix object

Value

A TargetRelations object

Slots

siRNAs

The siRNA identifiers

genes

The gene identifiers (Entrez)

path

The path to and .rds TargetRelations file

is.loaded

An indicator if target relations values are loaded

values

The quantitative target relation values between siRNAs and genes

Author(s)

Fabian Schmich

See Also

join

loadValues

unloadValues

writeValues

values

path<-

Examples

trels <- TargetRelations(readRDS(system.file("extdata", "TR_screen_A.rds", package = "gespeR")))

gespeR documentation built on Nov. 8, 2020, 5:35 p.m.