fortify.filterList: Convert a filterList to a data.table useful for ggplot

In ggcyto: Visualize Cytometry data with ggplot

Description

It tries to merge with pData that is associated with filterList as attribute 'pd'

Usage

## S3 method for class 'filterList'
fortify(model, data = NULL, nPoints = NULL, ...)

Arguments

model	filterList
data	not used
nPoints	not used
...	not used.

Value

data.table

Examples

dataDir <- system.file("extdata",package="flowWorkspaceData")
gs <- load_gs(list.files(dataDir, pattern = "gs_manual",full = TRUE))
gates <- gs_pop_get_gate(gs, "CD4")
gates <- as(gates, "filterList") #must convert list to filterList in order for the method to dispatch properly
fortify(gates)

ggcyto documentation built on Nov. 8, 2020, 5:30 p.m.