fortify.flowSet: Convert a flowFrame/flowSet/GatingSet to a ggplot-compatible...

Description Usage Arguments Value Examples

View source: R/fortify.R

Description

It extracts events matrices and appends the pData to it so that ggplot can use the pData for facetting.

Usage

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## S3 method for class 'flowFrame'
fortify(model, data, ...)

## S3 method for class 'flowSet'
fortify(model, data, ...)

## S3 method for class 'ncdfFlowList'
fortify(model, ...)

## S3 method for class 'GatingSetList'
fortify(model, ...)

## S3 method for class 'GatingSet'
fortify(model, ...)

Arguments

model

flowFrame, flowSet or GatingSet

data

not used.

...

not used.

Value

data.table

data.table

data.table

Examples

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dataDir <- system.file("extdata",package="flowWorkspaceData")
gs <- load_gs(list.files(dataDir, pattern = "gs_manual",full = TRUE))

attr(gs, "subset") <- "CD4" #must attach subset information to GatingSet object before foritfying it
fortify(gs)

fs <- getData(gs, "CD8")
fortify(fs)#fs is a flowSet/ncdfFlowSet

fr <- fs[[1]]
fortify(fr)#fr is a flowFrame

ggcyto documentation built on Jan. 15, 2019, 6:01 p.m.