scales_flowjo_biexp: Add a flowJo biexponential scale to the x or y axes of a...

In ggcyto: Visualize Cytometry data with ggplot

Description

Add a flowJo biexponential scale to the x or y axes of a ggcyto plot.

Usage

scale_x_flowjo_biexp(
  ...,
  maxValue = 262144,
  widthBasis = -10,
  pos = 4.5,
  neg = 0,
  equal.space = FALSE
)

scale_y_flowjo_biexp(
  ...,
  maxValue = 262144,
  widthBasis = -10,
  pos = 4.5,
  neg = 0,
  equal.space = FALSE
)

Arguments

...	common continuous scale parameters passed to 'continuous_scale' (not used currently)
maxValue, widthBasis, pos, neg	see 'help(flowjo_biexp')
equal.space	whether to display the breaks in equal.space format

Value

ScaleContinuous object

Examples

data(GvHD)
fr <- GvHD[[1]]
p <- ggcyto(fr, aes(x = `FL1-H`)) + geom_density()
#display at raw scale
p 
#display at transformed scale
p + scale_x_flowjo_biexp(maxValue = 1e4, widthBasis = 0)

Example output

Loading required package: ggplot2
Loading required package: flowCore
Loading required package: ncdfFlow
Loading required package: RcppArmadillo
Loading required package: BH
Loading required package: flowWorkspace
As part of improvements to flowWorkspace, some behavior of
GatingSet objects has changed. For details, please read the section
titled "The cytoframe and cytoset classes" in the package vignette:

  vignette("flowWorkspace-Introduction", "flowWorkspace")

ggcyto documentation built on Nov. 8, 2020, 5:30 p.m.