API for glmGamPoi
Fit a Gamma-Poisson Generalized Linear Model
| Global functions | |
|---|---|
| add_vector_to_each_column | Source code |
| add_vector_to_each_row | Source code |
| as.list.glmGamPoi | Man page Source code |
| calculate_mu | Source code |
| combine_size_factors_and_offset | Source code |
| compute_gp_deviance | Source code |
| compute_gp_deviance_residuals_matrix | Source code |
| conventional_deriv_score_function_fast | Source code |
| conventional_loglikelihood_fast | Source code |
| conventional_overdispersion_mle | Source code |
| conventional_score_function_fast | Source code |
| convert_chr_vec_to_model_matrix | Source code |
| convert_formula_to_model_matrix | Source code |
| delayed_matrix_apply_block | Source code |
| delayed_matrix_multiply | Source code |
| divide_each_column_by_vector | Source code |
| divide_each_row_by_vector | Source code |
| estimate_betas_fisher_scoring | Man page Source code |
| estimate_betas_group_wise | Man page Source code |
| estimate_betas_group_wise_optimize_helper | Source code |
| estimate_betas_roughly | Man page Source code |
| estimate_betas_roughly_group_wise | Man page Source code |
| estimate_dispersions_by_moment | Source code |
| estimate_dispersions_roughly | Source code |
| estimate_global_overdispersion | Source code |
| estimate_global_overdispersions_fast | Source code |
| estimate_overdispersions_fast | Source code |
| estimate_size_factors | Man page Source code |
| eval_with | Source code |
| eval_with_q | Source code |
| extract_data_from_formula | Source code |
| fitBeta_diagonal_fisher_scoring | Source code |
| fitBeta_fisher_scoring | Source code |
| fitBeta_one_group | Source code |
| format.glmGamPoi | Man page Source code |
| format.summary.glmGamPoi | Man page Source code |
| format_matrix | Man page Source code |
| get_col_data | Source code |
| get_groups_for_model_matrix | Source code |
| get_row_groups | Source code |
| glm_gp | Man page Source code |
| glm_gp_impl | Man page Source code |
| handle_data_parameter | Source code |
| handle_design_parameter | Source code |
| handle_subsample_parameter | Source code |
| is_on_disk.glmGamPoi | Source code |
| loc_median_fit | Man page Source code |
| lte_n_equal_rows | Source code |
| make_dataset | Source code |
| make_table_if_small | Source code |
| multiply_vector_to_each_column | Source code |
| multiply_vector_to_each_row | Source code |
| my_matrix_summary | Source code |
| my_vec_summary | Source code |
| overdispersion_mle | Man page Source code |
| overdispersion_mle_impl | Source code |
| overdispersion_shrinkage | Man page Source code |
| parse_contrast | Source code |
| parse_contrast_q | Source code |
| print.glmGamPoi | Man page |
| print.summary.glmGamPoi | Man page |
| qres.gampoi | Source code |
| residuals.glmGamPoi | Man page Source code |
| subtract_vector_from_each_column | Source code |
| subtract_vector_from_each_row | Source code |
| summary.glmGamPoi | Man page Source code |
| test_de | Man page Source code |
| test_de_q | Source code |
| test_pseudobulk | Source code |
| test_pseudobulk_q | Source code |
| validate_Y_matrix | Source code |
| validate_model_matrix | Source code |
| variance_prior | Man page Source code |
