as.list.glmGamPoi: Convert glmGamPoi object to a list

In glmGamPoi: Fit a Gamma-Poisson Generalized Linear Model

Description

Convert glmGamPoi object to a list

Usage

## S3 method for class 'glmGamPoi'
as.list(x, ...)

Arguments

x	an object with class glmGamPoi
...	not used

Value

The method returns a list with the following elements:

Beta

a matrix with dimensions nrow(data) x n_coefficients where n_coefficients is based on the design argument. It contains the estimated coefficients for each gene.

overdispersions

a vector with length nrow(data). The overdispersion parameter for each gene. It describes how much more the counts vary than one would expect according to the Poisson model.

Mu

a matrix with the same dimensions as dim(data). If the calculation happened on disk, than Mu is a HDF5Matrix. It contains the estimated mean value for each gene and sample.

size_factors

a vector with length ncol(data). The size factors are the inferred correction factors for different sizes of each sample. They are also sometimes called the exposure factor.

model_matrix

a matrix with dimensions ncol(data) x n_coefficients. It is build based on the design argument.

glmGamPoi documentation built on Nov. 8, 2020, 7:14 p.m.