Files in glmGamPoi

Fit a Gamma-Poisson Generalized Linear Model

README.md

NEWS

NAMESPACE

DESCRIPTION

build/vignette.rds

src/overdispersion.cpp

src/Makevars.win

src/RcppExports.cpp

src/Makevars

src/deviance.cpp

src/beta_estimation.cpp

R/calculate_mu.R R/test_de.R R/estimate_size_factors.R R/test_pseudobulk.R R/RcppExports.R R/utils.R R/quasi_gamma_poisson_shrinkage.R R/overdispersion.R R/loc_median_fit.R R/estimate_betas.R R/print_model.R R/glmGamPoi-package.R R/residuals.R R/glm_gp.R R/make_dataset.R R/eval_with.R R/glm_gp_impl.R R/parse_contrast.R vignettes/glmGamPoi.Rmd

vignettes/man/figures/README-coefficientComparison-1.png

man/overdispersion_mle.Rd man/test_de.Rd man/estimate_size_factors.Rd man/estimate_betas_group_wise.Rd man/format_matrix.Rd man/overdispersion_shrinkage.Rd man/estimate_betas_roughly.Rd man/glm_gp_impl.Rd man/print.glmGamPoi.Rd man/glm_gp.Rd man/estimate_betas_fisher_scoring.Rd man/loc_median_fit.Rd man/variance_prior.Rd man/as.list.glmGamPoi.Rd man/estimate_betas_roughly_group_wise.Rd man/residuals.glmGamPoi.Rd

man/figures/README-coefficientComparison-1.png

man/figures/logo.svg

man/figures/README-unnamed-chunk-11-1.png

tests/testthat.R tests/testthat/test-size_factors.R tests/testthat/test-calculate_mu.R tests/testthat/test-estimate_betas.R tests/testthat/test-eval_with.R tests/testthat/test-test_de.R tests/testthat/test-printing.R tests/testthat/test-overdispersion.R tests/testthat/test-shrinkage.R tests/testthat/check-derivatives.R tests/testthat/helper-architecture.R tests/testthat/test-loc_median_fit.R tests/testthat/test-residuals.R tests/testthat/test-glm_gp.R tests/testthat/test-parse_contrast.R

inst/doc/glmGamPoi.html

inst/doc/glmGamPoi.R inst/doc/glmGamPoi.Rmd

inst/include/deviance.h

inst/include/fisher_scoring_steps.h

glmGamPoi documentation built on Nov. 8, 2020, 7:14 p.m.