Man pages for glmSparseNet
Network Centrality Metrics for Elastic-Net Regularized Models
| buildLambda | Auxiliary function to generate suitable lambda parameters |
| buildStringNetwork | Build gene network from peptide ids |
| cv.glmDegree | GLMNET cross-validation model penalizing nodes with small... |
| cv.glmHub | GLMNET cross-validation model penalizing nodes with small... |
| cv.glmOrphan | GLMNET cross-validation model penalizing nodes with high... |
| cv.glmSparseNet | Calculate cross validating GLM model with network-based... |
| degreeCor | Calculate the degree of the correlation network based on... |
| degreeCov | Calculate the degree of the covariance network based on xdata |
| degreeSparsebn | Calculate degree of correlation matrix |
| dot-calcPenalty | Calculate penalty based on data |
| dot-degreeGeneric | Generic function to calculate degree based on data |
| dot-glmSparseNetPrivate | Calculate GLM model with network-based regularization |
| dot-networkGenericParallel | Calculate the upper triu of the matrix |
| dot-networkWorker | Worker to calculate edge weight for each pair of ix.i node... |
| ensemblGeneNames | Retrieve ensembl gene names from biomaRt |
| geneNames | Retrieve gene names from biomaRt |
| glmDegree | GLMNET model penalizing nodes with small degree |
| glmHub | GLMNET model penalizing nodes with small degree |
| glmOrphan | GLMNET model penalizing nodes with high degree |
| glmSparseNet | Calculate GLM model with network-based regularization |
| hallmarks | Retrieve hallmarks of cancer count for genes |
| heuristicScale | Heuristic function to use in high dimensions |
| hubHeuristic | Heuristic function to penalize nodes with low degree |
| networkCorParallel | Calculates the correlation network |
| networkCovParallel | Calculates the covariance network |
| networkOptions | Setup network options |
| orphanHeuristic | Heuristic function to penalize nodes with high degree |
| protein2EnsemblGeneNames | Retrieve ensembl gene ids from proteins |
| separate2GroupsCox | Separate data in High and Low risk groups (based on Cox... |
| stringDBhomoSapiens | Download protein-protein interactions from STRING DB |
| string.network.700.cache | Cache of protein-protein network, as it takes some time to... |
