exprs2adj: Convert gene expression data to adjacency matrix by using...

In gsean: Gene Set Enrichment Analysis with Networks

Description

A biological network is constructed from gene expression data and it is used for Gene Set Enrichment Analysis.

Usage

exprs2adj(x, pseudo = 1, ...)

Arguments

x	gene expression data
pseudo	pseudo number for log2 transformation (default: 1)
...	additional parameters for correlation; see WGCNA::cor

Value

adjacency matrix

Author(s)

Dongmin Jung

See Also

fgsea::fgsea, WGCNA::cor

Examples

data(exampleRanks)
Names <- names(exampleRanks)
exprs <- matrix(rnorm(10*length(exampleRanks)), ncol = 10)
adjacency <- exprs2adj(exprs)

gsean documentation built on Nov. 8, 2020, 6:36 p.m.