We provide efficient, easy-to-use tools for High-Throughput Sequencing (ChIP-seq, RNAseq etc.). These include MDS plots (analogues to PCA), detecting inefficient immuno-precipitation or over-amplification artifacts, tools to identify and test for genomic regions with large accumulation of reads, and visualization of coverage profiles.
|Author||Evarist Planet, Camille Stephan-Otto, Oscar Reina, Oscar Flores, David Rossell|
|Bioconductor views||QualityControl Sequencing|
|Maintainer||Oscar Reina <[email protected]>|
|Package repository||View on Bioconductor|
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