cmdsFit-class: Class "cmdsFit"

In htSeqTools: Quality Control, Visualization and Processing for High-Throughput Sequencing data

Description

Classical Multi-Dimensional Scaling Fit. Function cmds creates object of this class.

Objects from the Class

Objects can be created by calls of the form new("cmdsFit", ...).

Slots

points:

Object of class "matrix" with (x,y) coordinates in the approximated space.

d:

Object of class "matrix" with original distances between individuals.

dapprox:

Object of class "matrix" with distances between individuals in the approximated space.

R.square:

Percentage of variability in d explained by dapprox (object of class "numeric")

Methods

There are show and plot methods defined for this class.

Author(s)

David Rossell

See Also

cmdscale from package base.

Examples

showClass("cmdsFit")

htSeqTools documentation built on May 6, 2019, 3:39 a.m.